encode chip-seq data sets (Broad Institute Inc)
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Broad Institute Inc
encode chip-seq data sets
Encode Chip Seq Data Sets, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/encode+chip-seq+data/chip+seq+data/pmc03649963-145-4-11
Average 90 stars, based on 1 article reviews
Encode Chip Seq Data Sets, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/encode+chip-seq+data/chip+seq+data/pmc03649963-145-4-11
Average 90 stars, based on 1 article reviews
encode chip-seq data sets - by Bioz Stars,
2026-11
90/100 stars
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Chromatin Immunoprecipitation:Article Title: Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and ?-cell apoptosis Article Snippet: Using ENCODE ChIP-seq data available at the University of California, Santa Cruz genome browser ( http://genome.ucsc.edu/ ), we identified two regions of high-scoring transcription factor binding sites surrounding rs2632214. Article Title: Impact of the Genome on the Epigenome Is Manifested in DNA Methylation Patterns of Imprinted Regions in Monozygotic and Dizygotic Twins Article Snippet: When comparing the CTCF binding strengths at the various CTCF binding sites in the region in normal cell lines (ENCODE ChIP-seq data from the Chromatin Group at Broad Institute) we noted the results for the fifth CTCF binding site are markedly reduced compared to the other binding sites in the region ( ). Article Title: The Trans-Spliced Long Noncoding RNA tsRMST Impedes Human Embryonic Stem Cell Differentiation Through WNT5A-Mediated Inhibition of the Epithelial-to-Mesenchymal Transition. Article Snippet: Based on the Encode ChIP-seq data [26], we found that the promoters of WNT5A and WNT5B were modified by VC AlphaMed Press 2016 STEM CELLS H3K27me3 and occupied by NANOG and SUZ12 (Fig. 2A, 2B), thereby meeting the characteristics expected for tsRMST-regulated genes. Article Title: Directional DNA Methylation Changes and Complex Intermediate States Accompany Lineage Specificity in the Adult Hematopoietic Compartment Article Snippet: The ENCODE ChIP-seq data were generated at the Broad Institute and in the Bradley E. Bernstein lab at the Massachusetts General Hospital/Harvard Medical School. Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser. Article Title: Common fragile sites are characterized by histone hypoacetylation Article Snippet: We examined the Ac-H3K9 acetylation pattern of large genes (>1 Mb) in the genome by using the publicly-available ENCODE ChIP-Seq data (Bernstein Lab, ENCODE Chromatin Group, Massachusetts General Hospital/Harvard Medical School and Broad Institute), and found that the acetylation coverage of these genes is substantially lower than that of the human genome on average ( Supplementary Material, Fig. S6 ). Article Title: Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and ?-cell apoptosis Article Snippet: The chromosomal region surrounding rs2632214 was examined for potential transcription factor binding sites using the ENCODE ChIP-seq data available at the University of California, Santa Cruz genome browser ( http://genome.ucsc.edu/ ). Modification:Article Title: Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and ?-cell apoptosis Article Snippet: Using ENCODE ChIP-seq data available at the University of California, Santa Cruz genome browser ( http://genome.ucsc.edu/ ), we identified two regions of high-scoring transcription factor binding sites surrounding rs2632214. Article Title: Impact of the Genome on the Epigenome Is Manifested in DNA Methylation Patterns of Imprinted Regions in Monozygotic and Dizygotic Twins Article Snippet: When comparing the CTCF binding strengths at the various CTCF binding sites in the region in normal cell lines (ENCODE ChIP-seq data from the Chromatin Group at Broad Institute) we noted the results for the fifth CTCF binding site are markedly reduced compared to the other binding sites in the region ( ). Article Title: The Trans-Spliced Long Noncoding RNA tsRMST Impedes Human Embryonic Stem Cell Differentiation Through WNT5A-Mediated Inhibition of the Epithelial-to-Mesenchymal Transition. Article Snippet: Based on the Encode ChIP-seq data [26], we found that the promoters of WNT5A and WNT5B were modified by VC AlphaMed Press 2016 STEM CELLS H3K27me3 and occupied by NANOG and SUZ12 (Fig. 2A, 2B), thereby meeting the characteristics expected for tsRMST-regulated genes. Article Title: Directional DNA Methylation Changes and Complex Intermediate States Accompany Lineage Specificity in the Adult Hematopoietic Compartment Article Snippet: The ENCODE ChIP-seq data were generated at the Broad Institute and in the Bradley E. Bernstein lab at the Massachusetts General Hospital/Harvard Medical School. Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser. Article Title: Common fragile sites are characterized by histone hypoacetylation Article Snippet: We examined the Ac-H3K9 acetylation pattern of large genes (>1 Mb) in the genome by using the publicly-available ENCODE ChIP-Seq data (Bernstein Lab, ENCODE Chromatin Group, Massachusetts General Hospital/Harvard Medical School and Broad Institute), and found that the acetylation coverage of these genes is substantially lower than that of the human genome on average ( Supplementary Material, Fig. S6 ). Article Title: Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and ?-cell apoptosis Article Snippet: The chromosomal region surrounding rs2632214 was examined for potential transcription factor binding sites using the ENCODE ChIP-seq data available at the University of California, Santa Cruz genome browser ( http://genome.ucsc.edu/ ). Generated:Article Title: Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and ?-cell apoptosis Article Snippet: Using ENCODE ChIP-seq data available at the University of California, Santa Cruz genome browser ( http://genome.ucsc.edu/ ), we identified two regions of high-scoring transcription factor binding sites surrounding rs2632214. Article Title: Impact of the Genome on the Epigenome Is Manifested in DNA Methylation Patterns of Imprinted Regions in Monozygotic and Dizygotic Twins Article Snippet: When comparing the CTCF binding strengths at the various CTCF binding sites in the region in normal cell lines (ENCODE ChIP-seq data from the Chromatin Group at Broad Institute) we noted the results for the fifth CTCF binding site are markedly reduced compared to the other binding sites in the region ( ). Article Title: The Trans-Spliced Long Noncoding RNA tsRMST Impedes Human Embryonic Stem Cell Differentiation Through WNT5A-Mediated Inhibition of the Epithelial-to-Mesenchymal Transition. Article Snippet: Based on the Encode ChIP-seq data [26], we found that the promoters of WNT5A and WNT5B were modified by VC AlphaMed Press 2016 STEM CELLS H3K27me3 and occupied by NANOG and SUZ12 (Fig. 2A, 2B), thereby meeting the characteristics expected for tsRMST-regulated genes. Article Title: Directional DNA Methylation Changes and Complex Intermediate States Accompany Lineage Specificity in the Adult Hematopoietic Compartment Article Snippet: The ENCODE ChIP-seq data were generated at the Broad Institute and in the Bradley E. Bernstein lab at the Massachusetts General Hospital/Harvard Medical School. Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser. Article Title: Common fragile sites are characterized by histone hypoacetylation Article Snippet: We examined the Ac-H3K9 acetylation pattern of large genes (>1 Mb) in the genome by using the publicly-available ENCODE ChIP-Seq data (Bernstein Lab, ENCODE Chromatin Group, Massachusetts General Hospital/Harvard Medical School and Broad Institute), and found that the acetylation coverage of these genes is substantially lower than that of the human genome on average ( Supplementary Material, Fig. S6 ). Article Title: Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and ?-cell apoptosis Article Snippet: The chromosomal region surrounding rs2632214 was examined for potential transcription factor binding sites using the ENCODE ChIP-seq data available at the University of California, Santa Cruz genome browser ( http://genome.ucsc.edu/ ). Binding Assay:Article Title: Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and ?-cell apoptosis Article Snippet: Using ENCODE ChIP-seq data available at the University of California, Santa Cruz genome browser ( http://genome.ucsc.edu/ ), we identified two regions of high-scoring transcription factor binding sites surrounding rs2632214. Article Title: Impact of the Genome on the Epigenome Is Manifested in DNA Methylation Patterns of Imprinted Regions in Monozygotic and Dizygotic Twins Article Snippet: When comparing the CTCF binding strengths at the various CTCF binding sites in the region in normal cell lines (ENCODE ChIP-seq data from the Chromatin Group at Broad Institute) we noted the results for the fifth CTCF binding site are markedly reduced compared to the other binding sites in the region ( ). Article Title: The Trans-Spliced Long Noncoding RNA tsRMST Impedes Human Embryonic Stem Cell Differentiation Through WNT5A-Mediated Inhibition of the Epithelial-to-Mesenchymal Transition. Article Snippet: Based on the Encode ChIP-seq data [26], we found that the promoters of WNT5A and WNT5B were modified by VC AlphaMed Press 2016 STEM CELLS H3K27me3 and occupied by NANOG and SUZ12 (Fig. 2A, 2B), thereby meeting the characteristics expected for tsRMST-regulated genes. Article Title: Directional DNA Methylation Changes and Complex Intermediate States Accompany Lineage Specificity in the Adult Hematopoietic Compartment Article Snippet: The ENCODE ChIP-seq data were generated at the Broad Institute and in the Bradley E. Bernstein lab at the Massachusetts General Hospital/Harvard Medical School. Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser. Article Title: Common fragile sites are characterized by histone hypoacetylation Article Snippet: We examined the Ac-H3K9 acetylation pattern of large genes (>1 Mb) in the genome by using the publicly-available ENCODE ChIP-Seq data (Bernstein Lab, ENCODE Chromatin Group, Massachusetts General Hospital/Harvard Medical School and Broad Institute), and found that the acetylation coverage of these genes is substantially lower than that of the human genome on average ( Supplementary Material, Fig. S6 ). Article Title: Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and ?-cell apoptosis Article Snippet: The chromosomal region surrounding rs2632214 was examined for potential transcription factor binding sites using the ENCODE ChIP-seq data available at the University of California, Santa Cruz genome browser ( http://genome.ucsc.edu/ ). |